Atalanta, who were missing one of their top strikers Ademola Lookman because of a knee injury, slipped down to ninth in the standings on 15 points and will play in the two-legged knockout phase playoff round instead, according to Reuters.
Five-time winners Barcelona, who last lifted the trophy in 2015, had already secured their last-16 berth last week through a dramatic 5-4 comeback win at Benfica.
Yamal gave Barcelona the lead two minutes after the break from point-blank range before Ederson levelled for Atalanta in the 67th minute with a stunning shot from the edge of the area that sailed inside the left post.
Defender Araujo restored the lead for Barca with a header following a corner in the 72nd but Atalanta s Mario Pasalic equalised again seven minutes later, nutmegging goalkeeper Wojciech Szczesny with a low strike.
Atalanta, who had to measure themselves against teams such as Arsenal and Real Madrid in the competition s new league phase, will know their playoff rivals in the draw on Friday, with the games being played on Feb. 11-12 and Feb. 18-19.